{
  "_id": "6a213703cd65a98ecbd26c6b",
  "Package": "bfw",
  "Title": "Bayesian Framework for Computational Modeling",
  "Version": "0.4.2",
  "Date": "2022-02-22",
  "Authors@R": "person( \"Øystein Olav\",\"Skaar\", email=\"bayesianfw@gmail.com\", role=c(\"aut\",\"cre\"))",
  "Maintainer": "Øystein Olav Skaar <bayesianfw@gmail.com>",
  "Description": "Derived from the work of Kruschke (2015,\n<ISBN:9780124058880>), the present package aims to provide a\nframework for conducting Bayesian analysis using Markov chain\nMonte Carlo (MCMC) sampling utilizing the Just Another Gibbs\nSampler ('JAGS', Plummer, 2003,\n<https://mcmc-jags.sourceforge.io>).  The initial version\nincludes several modules for conducting Bayesian equivalents of\nchi-squared tests, analysis of variance (ANOVA), multiple\n(hierarchical) regression, softmax regression, and for fitting\ndata (e.g., structural equation modeling).",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/oeysan/bfw/",
  "BugReports": "https://github.com/oeysan/bfw/issues/",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
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  "NeedsCompilation": "no",
  "RoxygenNote": "7.1.2",
  "SystemRequirements": "JAGS >=4.3.0 <https://mcmc-jags.sourceforge.io>,\nJava JDK >=1.4 <https://www.java.com/en/download/manual.jsp>",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libcairo2-dev libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev libharfbuzz-dev jags default-jdk libicu-dev\nlibjpeg-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev\nlibssl-dev",
  "Repository": "https://oeysan.r-universe.dev",
  "Date/Publication": "2022-02-22 10:50:27 UTC",
  "RemoteUrl": "https://github.com/oeysan/bfw",
  "RemoteRef": "HEAD",
  "RemoteSha": "9d2b94c2b4fa42681bc3be7bd6063810e7612200",
  "Packaged": {
    "Date": "2026-06-04 08:23:59 UTC",
    "User": "root"
  },
  "Author": "Øystein Olav Skaar [aut, cre]",
  "MD5sum": "d0dc227ace34f6ec09f3d406ef67546f",
  "_user": "oeysan",
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  "_created": "2026-06-04T08:23:59.000Z",
  "_published": "2026-06-04T08:27:47.364Z",
  "_distro": "noble",
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  "_host": "GitHub-Actions",
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  "_updates": [],
  "_tags": [],
  "_topics": [
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    "bayesian-statistics",
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    "psychological-science",
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  "_stars": 10,
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    "type": "user",
    "name": "Øystein Olav Skaar",
    "description": "Associate professor in educational psychology. \r\nDex build, swordsman class."
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bfw"
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    "extra/citation.html",
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    "extra/contents.json",
    "extra/NEWS.html",
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    "bfw",
    "CapWords",
    "ChangeNames",
    "ComputeHDI",
    "ContrastNames",
    "DiagMCMC",
    "DistinctColors",
    "ETA",
    "FileName",
    "FindEnvironment",
    "FlattenList",
    "GammaDist",
    "GetRange",
    "Interleave",
    "InverseHDI",
    "Layout",
    "MatrixCombn",
    "MergeMCMC",
    "MultiGrep",
    "Normalize",
    "PadVector",
    "ParseNumber",
    "ParsePlot",
    "PlotCirclize",
    "PlotData",
    "PlotMean",
    "PlotNominal",
    "PlotParam",
    "ReadFile",
    "RemoveEmpty",
    "RemoveGarbage",
    "RemoveSpaces",
    "RunContrasts",
    "RunMCMC",
    "SingleString",
    "StatsBernoulli",
    "StatsCovariate",
    "StatsFit",
    "StatsKappa",
    "StatsMean",
    "StatsMetric",
    "StatsNominal",
    "StatsRegression",
    "StatsSoftmax",
    "SumMCMC",
    "SumToZero",
    "TidyCode",
    "Trim",
    "TrimSplit",
    "VectorSub"
  ],
  "_datasets": [
    {
      "name": "Cats",
      "title": "Dataset with Cats",
      "object": "Cats",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Reward",
        "Dance",
        "Alignment",
        "Ratings"
      ],
      "rows": 2000,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "AddNames",
      "title": "Add Names",
      "topics": [
        "AddNames"
      ]
    },
    {
      "page": "bfw",
      "title": "Settings",
      "topics": [
        "bfw"
      ]
    },
    {
      "page": "CapWords",
      "title": "Capitalize Words",
      "topics": [
        "CapWords"
      ]
    },
    {
      "page": "Cats",
      "title": "Dataset with Cats",
      "topics": [
        "Cats"
      ]
    },
    {
      "page": "ChangeNames",
      "title": "Change Names",
      "topics": [
        "ChangeNames"
      ]
    },
    {
      "page": "ComputeHDI",
      "title": "Compute HDI",
      "topics": [
        "ComputeHDI"
      ]
    },
    {
      "page": "ContrastNames",
      "title": "Contrast Names",
      "topics": [
        "ContrastNames"
      ]
    },
    {
      "page": "DiagMCMC",
      "title": "Diagnose MCMC",
      "topics": [
        "DiagMCMC"
      ]
    },
    {
      "page": "DistinctColors",
      "title": "Distinct Colors",
      "topics": [
        "DistinctColors"
      ]
    },
    {
      "page": "ETA",
      "title": "ETA",
      "topics": [
        "ETA"
      ]
    },
    {
      "page": "FileName",
      "title": "File Name",
      "topics": [
        "FileName"
      ]
    },
    {
      "page": "FindEnvironment",
      "title": "Find Environment",
      "topics": [
        "FindEnvironment"
      ]
    },
    {
      "page": "FlattenList",
      "title": "Flatten List",
      "topics": [
        "FlattenList"
      ]
    },
    {
      "page": "GammaDist",
      "title": "Gamma Distribution",
      "topics": [
        "GammaDist"
      ]
    },
    {
      "page": "GetRange",
      "title": "Get Range",
      "topics": [
        "GetRange"
      ]
    },
    {
      "page": "Interleave",
      "title": "Interleave",
      "topics": [
        "Interleave"
      ]
    },
    {
      "page": "InverseHDI",
      "title": "Compute Inverse HDI",
      "topics": [
        "InverseHDI"
      ]
    },
    {
      "page": "Layout",
      "title": "Layout",
      "topics": [
        "Layout"
      ]
    },
    {
      "page": "MatrixCombn",
      "title": "Matrix Combinations",
      "topics": [
        "MatrixCombn"
      ]
    },
    {
      "page": "MergeMCMC",
      "title": "Merge MCMC",
      "topics": [
        "MergeMCMC"
      ]
    },
    {
      "page": "MultiGrep",
      "title": "Multi Grep",
      "topics": [
        "MultiGrep"
      ]
    },
    {
      "page": "Normalize",
      "title": "Normalize",
      "topics": [
        "Normalize"
      ]
    },
    {
      "page": "PadVector",
      "title": "Pad Vector",
      "topics": [
        "PadVector"
      ]
    },
    {
      "page": "ParseNumber",
      "title": "Parse Numbers",
      "topics": [
        "ParseNumber"
      ]
    },
    {
      "page": "ParsePlot",
      "title": "Parse Plot",
      "topics": [
        "ParsePlot"
      ]
    },
    {
      "page": "PlotCirclize",
      "title": "Circlize Plot",
      "topics": [
        "PlotCirclize"
      ]
    },
    {
      "page": "PlotData",
      "title": "Plot Data",
      "topics": [
        "PlotData"
      ]
    },
    {
      "page": "PlotMean",
      "title": "Plot Mean",
      "topics": [
        "PlotMean"
      ]
    },
    {
      "page": "PlotNominal",
      "title": "Plot Nominal",
      "topics": [
        "PlotNominal"
      ]
    },
    {
      "page": "PlotParam",
      "title": "Plot Param",
      "topics": [
        "PlotParam"
      ]
    },
    {
      "page": "ReadFile",
      "title": "Read File",
      "topics": [
        "ReadFile"
      ]
    },
    {
      "page": "RemoveEmpty",
      "title": "Remove Empty",
      "topics": [
        "RemoveEmpty"
      ]
    },
    {
      "page": "RemoveGarbage",
      "title": "Remove Garbage",
      "topics": [
        "RemoveGarbage"
      ]
    },
    {
      "page": "RemoveSpaces",
      "title": "Remove Spaces",
      "topics": [
        "RemoveSpaces"
      ]
    },
    {
      "page": "RunContrasts",
      "title": "Run Contrasts",
      "topics": [
        "RunContrasts"
      ]
    },
    {
      "page": "RunMCMC",
      "title": "Run MCMC",
      "topics": [
        "RunMCMC"
      ]
    },
    {
      "page": "SingleString",
      "title": "Single String",
      "topics": [
        "SingleString"
      ]
    },
    {
      "page": "StatsBernoulli",
      "title": "Bernoulli Trials",
      "topics": [
        "StatsBernoulli"
      ]
    },
    {
      "page": "StatsCovariate",
      "title": "Covariate",
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        "StatsFit"
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      "page": "StatsKappa",
      "title": "Cohen's Kappa",
      "topics": [
        "StatsKappa"
      ]
    },
    {
      "page": "StatsMean",
      "title": "Mean Data",
      "topics": [
        "StatsMean"
      ]
    },
    {
      "page": "StatsMetric",
      "title": "Predict Metric",
      "topics": [
        "StatsMetric"
      ]
    },
    {
      "page": "StatsNominal",
      "title": "Predict Nominal",
      "topics": [
        "StatsNominal"
      ]
    },
    {
      "page": "StatsRegression",
      "title": "Regression",
      "topics": [
        "StatsRegression"
      ]
    },
    {
      "page": "StatsSoftmax",
      "title": "Softmax Regression",
      "topics": [
        "StatsSoftmax"
      ]
    },
    {
      "page": "SumMCMC",
      "title": "Summarize MCMC",
      "topics": [
        "SumMCMC"
      ]
    },
    {
      "page": "SumToZero",
      "title": "Sum to Zero",
      "topics": [
        "SumToZero"
      ]
    },
    {
      "page": "TidyCode",
      "title": "Tidy Code",
      "topics": [
        "TidyCode"
      ]
    },
    {
      "page": "Trim",
      "title": "Trim",
      "topics": [
        "Trim"
      ]
    },
    {
      "page": "TrimSplit",
      "title": "Trim Split",
      "topics": [
        "TrimSplit"
      ]
    },
    {
      "page": "VectorSub",
      "title": "Pattern Matching and Replacement From Vectors",
      "topics": [
        "VectorSub"
      ]
    }
  ],
  "_pkglogo": "https://github.com/oeysan/bfw/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/oeysan/bfw/raw/HEAD/README.md",
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      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
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  "_vignettes": [
    {
      "source": "fit_latent_data.Rmd",
      "filename": "fit_latent_data.html",
      "title": "Fit Latent Data",
      "author": "Øystein Olav Skaar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Fit Latent Data",
        "First we simulate some data",
        "Next we run a standard mediation analysis using lavaan",
        "Now for the Bayesian model",
        "Time for some noise",
        "Rerun the lavaan model",
        "Run the Bayesian model with robust estimates"
      ],
      "created": "2022-02-22 10:50:27",
      "modified": "2022-02-22 10:50:27",
      "commits": 1
    },
    {
      "source": "fit_observed_data.Rmd",
      "filename": "fit_observed_data.html",
      "title": "Fit Observed Data",
      "author": "Øystein Olav Skaar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Fit Observed Data",
        "First we simulate some data",
        "Then we create some observed data based on the latent variables",
        "Next we run a standard observed mediation analysis using lavaan",
        "Run the Bayesian model on observed data",
        "Let's add some noise to the observed data",
        "Run the lavaan model on biased data",
        "Finally, run the Bayesian model with robust estimates on biased data"
      ],
      "created": "2022-02-22 10:50:27",
      "modified": "2022-02-22 10:50:27",
      "commits": 1
    },
    {
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      "filename": "plot_mean.html",
      "title": "Plot Data",
      "author": "Øystein Olav Skaar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Plot Data",
        "First we simulate some data and estimate means and standard deviations",
        "Plot the data as repeated measures",
        "Lets add some noise",
        "Plot the noise as repeated measures",
        "Let's add a group",
        "Plot the split data"
      ],
      "created": "2022-02-22 10:50:27",
      "modified": "2022-02-22 10:50:27",
      "commits": 1
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    {
      "source": "metric.Rmd",
      "filename": "metric.html",
      "title": "Predict Metric",
      "author": "Øystein Olav Skaar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Predict Metric",
        "Next we'll run the Bayesian model to analyze the cats",
        "Uhm. That's a lot of obscure output",
        "References"
      ],
      "created": "2022-02-22 10:50:27",
      "modified": "2022-02-22 10:50:27",
      "commits": 1
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    {
      "source": "regression.Rmd",
      "filename": "regression.html",
      "title": "Regression",
      "author": "Øystein Olav Skaar",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Regression",
        "First we simulate some data",
        "Check the correlation and regression results using frequentist methods",
        "Then the regression results using the Bayesian model",
        "Now we add some noise",
        "Repeat",
        "Finally, using Bayesian model with robust estimates"
      ],
      "created": "2022-02-22 10:50:27",
      "modified": "2022-02-22 10:50:27",
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